IL_5M1J_007

3D structure

PDB id

5M1J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nonstop ribosomal complex bound with Dom34 and Hbs1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

AU*AGUUGU

Length

8 nucleotides

Bulged bases

5M1J|1|14|U|147

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5M1J_007 not in the Motif Atlas

Homologous match to IL_5TBW_007

Geometric discrepancy: 0.0997

The information below is about IL_5TBW_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_19724.3

Basepair signature

cWW-cWW-L-cWW-L

Number of instances in this motif group

4

Unit IDs

5M1J|1|14|A|123
5M1J|1|14|U|124
*
5M1J|1|14|A|144
5M1J|1|14|G|145
5M1J|1|14|U|146
5M1J|1|14|U|147
5M1J|1|14|G|148
5M1J|1|14|U|149

Current chains

Chain 14

25S ribosomal RNA

Nearby chains

Chain 44

5.8S ribosomal RNA; 5.8S rRNA

Chain G5

60S ribosomal protein L8-A

Chain N5

60S ribosomal protein L15-A