IL_5M1J_010

3D structure

PDB id

5M1J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nonstop ribosomal complex bound with Dom34 and Hbs1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UG*UUUGUA

Length

8 nucleotides

Bulged bases

5M1J|1|14|U|252

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5M1J_010 not in the Motif Atlas

Homologous match to IL_5TBW_010

Geometric discrepancy: 0.2497

The information below is about IL_5TBW_010

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_37379.1

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

1

Unit IDs

5M1J|1|14|U|169
5M1J|1|14|G|170
*
5M1J|1|14|U|248
5M1J|1|14|U|249
5M1J|1|14|U|250
5M1J|1|14|G|251
5M1J|1|14|U|252
5M1J|1|14|A|253

Current chains

Chain 14

25S ribosomal RNA

Nearby chains

Chain G5

60S ribosomal protein L8-A

Chain L5

60S ribosomal protein L13-A

Chain h5

60S ribosomal protein L35-A