IL_5M1J_014
3D structure
- PDB id
- 5M1J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Nonstop ribosomal complex bound with Dom34 and Hbs1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- GAAC*GAGUGAAAAAGUAC
- Length
- 18 nucleotides
- Bulged bases
- 5M1J|1|14|A|398, 5M1J|1|14|A|402
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5M1J_014 not in the Motif Atlas
- Geometric match to IL_5TBW_014
- Geometric discrepancy: 0.1112
- The information below is about IL_5TBW_014
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_60992.7
- Basepair signature
- cWW-cWS-tSH-L-tHH-tWH-cWW-tSS-tSH-L-L
- Number of instances in this motif group
- 6
Unit IDs
5M1J|1|14|G|376
5M1J|1|14|A|377
5M1J|1|14|A|378
5M1J|1|14|C|379
*
5M1J|1|14|G|390
5M1J|1|14|A|391
5M1J|1|14|G|392
5M1J|1|14|U|393
5M1J|1|14|G|394
5M1J|1|14|A|395
5M1J|1|14|A|396
5M1J|1|14|A|397
5M1J|1|14|A|398
5M1J|1|14|A|399
5M1J|1|14|G|400
5M1J|1|14|U|401
5M1J|1|14|A|402
5M1J|1|14|C|403
Current chains
- Chain 14
- 25S ribosomal RNA
Nearby chains
- Chain 44
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain P5
- 60S ribosomal protein L17-A
- Chain Y5
- 60S ribosomal protein L26-A
- Chain l5
- 60S ribosomal protein L39
Coloring options: