IL_5M1J_017
3D structure
- PDB id
- 5M1J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Nonstop ribosomal complex bound with Dom34 and Hbs1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- CAGACAGG*CAUAAUG
- Length
- 15 nucleotides
- Bulged bases
- 5M1J|1|14|A|440
- QA status
- Missing nucleotides
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5M1J_017 not in the Motif Atlas
- Homologous match to IL_5TBW_017
- Geometric discrepancy: 0.2095
- The information below is about IL_5TBW_017
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_33557.1
- Basepair signature
- cWW-tHH-R-L-R-L-L-R-L-R-cWW
- Number of instances in this motif group
- 1
Unit IDs
5M1J|1|14|C|435
5M1J|1|14|A|436
5M1J|1|14|G|437
5M1J|1|14|A|438
5M1J|1|14|C|439
5M1J|1|14|A|440
5M1J|1|14|G|494
5M1J|1|14|G|495
*
5M1J|1|14|C|618
5M1J|1|14|A|619
5M1J|1|14|U|620
5M1J|1|14|A|621
5M1J|1|14|A|622
5M1J|1|14|U|623
5M1J|1|14|G|624
Current chains
- Chain 14
- 25S ribosomal RNA
Nearby chains
- Chain E5
- 60S ribosomal protein L6-A
- Chain P5
- 60S ribosomal protein L17-A
- Chain e5
- 60S ribosomal protein L32
- Chain f5
- 60S ribosomal protein L33-A
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