IL_5M1J_019
3D structure
- PDB id
- 5M1J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Nonstop ribosomal complex bound with Dom34 and Hbs1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- GGAUAAAUC*GGAAUAC
- Length
- 16 nucleotides
- Bulged bases
- 5M1J|1|14|A|519, 5M1J|1|14|U|520
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5M1J_019 not in the Motif Atlas
- Homologous match to IL_5TBW_019
- Geometric discrepancy: 0.0998
- The information below is about IL_5TBW_019
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_74024.1
- Basepair signature
- cWW-L-R-L-R-L-R-L-R-L-R-cWW
- Number of instances in this motif group
- 2
Unit IDs
5M1J|1|14|G|517
5M1J|1|14|G|518
5M1J|1|14|A|519
5M1J|1|14|U|520
5M1J|1|14|A|521
5M1J|1|14|A|522
5M1J|1|14|A|523
5M1J|1|14|U|524
5M1J|1|14|C|525
*
5M1J|1|14|G|567
5M1J|1|14|G|568
5M1J|1|14|A|569
5M1J|1|14|A|570
5M1J|1|14|U|571
5M1J|1|14|A|572
5M1J|1|14|C|573
Current chains
- Chain 14
- 25S ribosomal RNA
Nearby chains
- Chain C5
- 60S ribosomal protein L4-A
- Chain F5
- 60S ribosomal protein L7-A
- Chain M5
- 60S ribosomal protein L14-A
- Chain S5
- 60S ribosomal protein L20-A
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