IL_5M1J_029

3D structure

PDB id

5M1J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nonstop ribosomal complex bound with Dom34 and Hbs1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GU*GGC

Length

5 nucleotides

Bulged bases

5M1J|1|14|G|860

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5M1J_029 not in the Motif Atlas

Geometric match to IL_7RQB_020

Geometric discrepancy: 0.1449

The information below is about IL_7RQB_020

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_00225.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

42

Unit IDs

5M1J|1|14|G|833
5M1J|1|14|U|834
*
5M1J|1|14|G|859
5M1J|1|14|G|860
5M1J|1|14|C|861

Current chains

Chain 14

25S ribosomal RNA

Nearby chains

Chain A5

60S ribosomal protein L2-A

Chain R5

60S ribosomal protein L19-A

Chain p5

60S ribosomal protein L43-B