IL_5M1J_039

3D structure

PDB id

5M1J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nonstop ribosomal complex bound with Dom34 and Hbs1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

AA*UUU

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5M1J_039 not in the Motif Atlas

Homologous match to IL_5TBW_039

Geometric discrepancy: 0.1175

The information below is about IL_5TBW_039

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_18604.1

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

46

Unit IDs

5M1J|1|14|A|997
5M1J|1|14|A|998
*
5M1J|1|14|U|1050
5M1J|1|14|U|1051
5M1J|1|14|U|1052

Current chains

Chain 14

25S ribosomal RNA

Nearby chains

Chain 34

5S ribosomal RNA; 5S rRNA

Chain D5

60S ribosomal protein L5

Chain I5

60S ribosomal protein L10

Chain T5

60S ribosomal protein L21-A