IL_5M1J_043

3D structure

PDB id

5M1J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nonstop ribosomal complex bound with Dom34 and Hbs1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GGUUCCG*UGACC

Length

12 nucleotides

Bulged bases

5M1J|1|14|C|1016, 5M1J|1|14|C|1017

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5M1J_043 not in the Motif Atlas

Geometric match to IL_7VYX_008

Geometric discrepancy: 0.3951

The information below is about IL_7VYX_008

Detailed Annotation

Partly complementary

Broad Annotation

Partly complementary

Motif group

IL_49751.4

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

16

Unit IDs

5M1J|1|14|G|1012
5M1J|1|14|G|1013
5M1J|1|14|U|1014
5M1J|1|14|U|1015
5M1J|1|14|C|1016
5M1J|1|14|C|1017
5M1J|1|14|G|1018
*
5M1J|1|14|U|1034
5M1J|1|14|G|1035
5M1J|1|14|A|1036
5M1J|1|14|C|1037
5M1J|1|14|C|1038

Current chains

Chain 14

25S ribosomal RNA

Nearby chains

Chain D5

60S ribosomal protein L5

Chain I5

60S ribosomal protein L10

Chain J5

60S ribosomal protein L11-A