IL_5M1J_058
3D structure
- PDB id
- 5M1J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Nonstop ribosomal complex bound with Dom34 and Hbs1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- UGACGAAG*UCGAA
- Length
- 13 nucleotides
- Bulged bases
- 5M1J|1|14|C|1391
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5M1J_058 not in the Motif Atlas
- Homologous match to IL_5TBW_059
- Geometric discrepancy: 0.1357
- The information below is about IL_5TBW_059
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_70923.5
- Basepair signature
- cWW-cWW-tSS-tSH-tHS-cWW-tHS
- Number of instances in this motif group
- 32
Unit IDs
5M1J|1|14|U|1388
5M1J|1|14|G|1389
5M1J|1|14|A|1390
5M1J|1|14|C|1391
5M1J|1|14|G|1392
5M1J|1|14|A|1393
5M1J|1|14|A|1394
5M1J|1|14|G|1395
*
5M1J|1|14|U|1415
5M1J|1|14|C|1416
5M1J|1|14|G|1417
5M1J|1|14|A|1418
5M1J|1|14|A|1419
Current chains
- Chain 14
- 25S ribosomal RNA
Nearby chains
- Chain 44
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain C5
- 60S ribosomal protein L4-A
- Chain E5
- 60S ribosomal protein L6-A
- Chain P5
- 60S ribosomal protein L17-A
- Chain Y5
- 60S ribosomal protein L26-A
- Chain e5
- 60S ribosomal protein L32
Coloring options: