IL_5M1J_084

3D structure

PDB id

5M1J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nonstop ribosomal complex bound with Dom34 and Hbs1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CGG*CUUG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5M1J_084 not in the Motif Atlas

Geometric match to IL_4V9F_053

Geometric discrepancy: 0.2355

The information below is about IL_4V9F_053

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_09990.4

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

2

Unit IDs

5M1J|1|14|C|1980
5M1J|1|14|G|1981
5M1J|1|14|G|1982
*
5M1J|1|14|C|2039
5M1J|1|14|U|2040
5M1J|1|14|U|2041
5M1J|1|14|G|2042

Current chains

Chain 14

25S ribosomal RNA

Nearby chains

Chain Z5

60S ribosomal protein L27-A

Chain c5

60S ribosomal protein L30