IL_5M1J_091

3D structure

PDB id

5M1J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nonstop ribosomal complex bound with Dom34 and Hbs1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GC*GCAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5M1J_091 not in the Motif Atlas

Geometric match to IL_5TBW_089

Geometric discrepancy: 0.1393

The information below is about IL_5TBW_089

Detailed Annotation

Bulged stacked bases

Broad Annotation

Bulged stacked bases

Motif group

IL_22551.1

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

9

Unit IDs

5M1J|1|14|G|2276
5M1J|1|14|C|2277
*
5M1J|1|14|G|2307
5M1J|1|14|C|2308
5M1J|1|14|A|2309
5M1J|1|14|U|2310

Current chains

Chain 14

25S ribosomal RNA

Nearby chains

Chain 22

Small subunit ribosomal RNA; SSU rRNA

Chain A3

Transfer RNA; tRNA

Chain n5

60S ribosomal protein L41-B