IL_5M1J_117

3D structure

PDB id

5M1J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nonstop ribosomal complex bound with Dom34 and Hbs1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CG*CAG

Length

5 nucleotides

Bulged bases

5M1J|1|14|A|2971

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5M1J_117 not in the Motif Atlas

Geometric match to IL_1U9S_001

Geometric discrepancy: 0.2148

The information below is about IL_1U9S_001

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_14190.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

160

Unit IDs

5M1J|1|14|C|2960
5M1J|1|14|G|2961
*
5M1J|1|14|C|2970
5M1J|1|14|A|2971
5M1J|1|14|G|2972

Current chains

Chain 14

25S ribosomal RNA

Nearby chains

Chain A3

Transfer RNA; tRNA

Chain A5

60S ribosomal protein L2-A

Chain I5

60S ribosomal protein L10