IL_5M1J_124

3D structure

PDB id

5M1J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nonstop ribosomal complex bound with Dom34 and Hbs1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GAUUAU*AGAAUC

Length

12 nucleotides

Bulged bases

5M1J|1|14|A|3130

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5M1J_124 not in the Motif Atlas

Geometric match to IL_7RQB_107

Geometric discrepancy: 0.1806

The information below is about IL_7RQB_107

Detailed Annotation

UAA/GAN with extra cWW

Broad Annotation

No text annotation

Motif group

IL_49767.5

Basepair signature

cWW-cWW-tWH-L-tHS-cWW

Number of instances in this motif group

5

Unit IDs

5M1J|1|14|G|3102
5M1J|1|14|A|3103
5M1J|1|14|U|3104
5M1J|1|14|U|3105
5M1J|1|14|A|3106
5M1J|1|14|U|3107
*
5M1J|1|14|A|3127
5M1J|1|14|G|3128
5M1J|1|14|A|3129
5M1J|1|14|A|3130
5M1J|1|14|U|3131
5M1J|1|14|C|3132

Current chains

Chain 14

25S ribosomal RNA

Nearby chains

Chain H5

60S ribosomal protein L9-A

Chain K5

60S ribosomal protein L16-A

Chain m5

Ubiquitin-60S ribosomal protein L40