IL_5M1J_147

3D structure

PDB id

5M1J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nonstop ribosomal complex bound with Dom34 and Hbs1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GUUAU*AUUUC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5M1J_147 not in the Motif Atlas

Geometric match to IL_8VMB_003

Geometric discrepancy: 0.3881

The information below is about IL_8VMB_003

Detailed Annotation

Triple non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_71154.3

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

17

Unit IDs

5M1J|1|22|G|109
5M1J|1|22|U|110
5M1J|1|22|U|111
5M1J|1|22|A|112
5M1J|1|22|U|113
*
5M1J|1|22|A|301
5M1J|1|22|U|302
5M1J|1|22|U|303
5M1J|1|22|U|304
5M1J|1|22|C|305

Current chains

Chain 22

18S ribosomal RNA

Nearby chains

Chain E2

40S ribosomal protein S4-A

Chain I2

40S ribosomal protein S8-A

Chain L2

40S ribosomal protein S11-A