IL_5M1J_148

3D structure

PDB id

5M1J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nonstop ribosomal complex bound with Dom34 and Hbs1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UCGU*AA

Length

6 nucleotides

Bulged bases

5M1J|1|22|C|114, 5M1J|1|22|G|115

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5M1J_148 not in the Motif Atlas

Geometric match to IL_5WLH_001

Geometric discrepancy: 0.1789

The information below is about IL_5WLH_001

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_82107.5

Basepair signature

cWW-cWW

Number of instances in this motif group

31

Unit IDs

5M1J|1|22|U|113
5M1J|1|22|C|114
5M1J|1|22|G|115
5M1J|1|22|U|116
*
5M1J|1|22|A|300
5M1J|1|22|A|301

Current chains

Chain 22

18S ribosomal RNA

Nearby chains

Chain E2

40S ribosomal protein S4-A

Chain I2

40S ribosomal protein S8-A

Chain L2

40S ribosomal protein S11-A