IL_5M1J_152

3D structure

PDB id

5M1J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nonstop ribosomal complex bound with Dom34 and Hbs1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CGACC*GGAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5M1J_152 not in the Motif Atlas

Geometric match to IL_7A0S_056

Geometric discrepancy: 0.3238

The information below is about IL_7A0S_056

Detailed Annotation

Double sheared with near cWW

Broad Annotation

Double sheared

Motif group

IL_87767.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

17

Unit IDs

5M1J|1|22|C|186
5M1J|1|22|G|187
5M1J|1|22|A|188
5M1J|1|22|C|189
5M1J|1|22|C|190
*
5M1J|1|22|G|195
5M1J|1|22|G|196
5M1J|1|22|A|197
5M1J|1|22|A|198
5M1J|1|22|G|199

Current chains

Chain 22

18S ribosomal RNA

Nearby chains

Chain I2

40S ribosomal protein S8-A