IL_5M1J_161

3D structure

PDB id

5M1J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nonstop ribosomal complex bound with Dom34 and Hbs1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GGA*UAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5M1J_161 not in the Motif Atlas

Homologous match to IL_4V88_405

Geometric discrepancy: 0.1821

The information below is about IL_4V88_405

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10167.1

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

48

Unit IDs

5M1J|1|22|G|389
5M1J|1|22|G|390
5M1J|1|22|A|391
*
5M1J|1|22|U|406
5M1J|1|22|A|407
5M1J|1|22|C|408

Current chains

Chain 22

18S ribosomal RNA

Nearby chains

Chain G2

40S ribosomal protein S6-A

Chain I2

40S ribosomal protein S8-A