IL_5M1J_163

3D structure

PDB id

5M1J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nonstop ribosomal complex bound with Dom34 and Hbs1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UUA*UA

Length

5 nucleotides

Bulged bases

5M1J|1|22|U|440

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5M1J_163 not in the Motif Atlas

Homologous match to IL_4V88_407

Geometric discrepancy: 0.155

The information below is about IL_4V88_407

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.19

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

5M1J|1|22|U|439
5M1J|1|22|U|440
5M1J|1|22|A|441
*
5M1J|1|22|U|463
5M1J|1|22|A|464

Current chains

Chain 22

18S ribosomal RNA

Nearby chains

Chain A6

Protein HBS1

Chain E2

40S ribosomal protein S4-A

Chain J2

40S ribosomal protein S9-A

Chain Y2

40S ribosomal protein S24-A