IL_5M1J_166

3D structure

PDB id

5M1J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nonstop ribosomal complex bound with Dom34 and Hbs1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GUACA*UUAAC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5M1J_166 not in the Motif Atlas

Geometric match to IL_4WFL_001

Geometric discrepancy: 0.3773

The information below is about IL_4WFL_001

Detailed Annotation

Double sheared with non-canonical cWW

Broad Annotation

Double sheared

Motif group

IL_87767.1

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

16

Unit IDs

5M1J|1|22|G|516
5M1J|1|22|U|517
5M1J|1|22|A|518
5M1J|1|22|C|519
5M1J|1|22|A|520
*
5M1J|1|22|U|532
5M1J|1|22|U|533
5M1J|1|22|A|534
5M1J|1|22|A|535
5M1J|1|22|C|536

Current chains

Chain 22

18S ribosomal RNA

Nearby chains

Chain J2

40S ribosomal protein S9-A

Chain Y2

40S ribosomal protein S24-A