IL_5M1J_175
3D structure
- PDB id
- 5M1J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Nonstop ribosomal complex bound with Dom34 and Hbs1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- UUU*AUG
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5M1J_175 not in the Motif Atlas
- Homologous match to IL_4V88_424
- Geometric discrepancy: 0.1825
- The information below is about IL_4V88_424
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_44258.2
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 301
Unit IDs
5M1J|1|22|U|748
5M1J|1|22|U|749
5M1J|1|22|U|750
*
5M1J|1|22|A|799
5M1J|1|22|U|800
5M1J|1|22|G|801
Current chains
- Chain 22
- 18S ribosomal RNA
Nearby chains
- Chain E2
- 40S ribosomal protein S4-A
- Chain H2
- 40S ribosomal protein S7-A
- Chain L2
- 40S ribosomal protein S11-A
- Chain W2
- 40S ribosomal protein S22-A
Coloring options: