IL_5M1J_178

3D structure

PDB id

5M1J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nonstop ribosomal complex bound with Dom34 and Hbs1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GGAC*GUUUU

Length

9 nucleotides

Bulged bases

5M1J|1|22|U|959

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5M1J_178 not in the Motif Atlas

Homologous match to IL_4V88_429

Geometric discrepancy: 0.1282

The information below is about IL_4V88_429

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_30621.4

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

66

Unit IDs

5M1J|1|22|G|867
5M1J|1|22|G|868
5M1J|1|22|A|869
5M1J|1|22|C|870
*
5M1J|1|22|G|957
5M1J|1|22|U|958
5M1J|1|22|U|959
5M1J|1|22|U|960
5M1J|1|22|U|961

Current chains

Chain 22

18S ribosomal RNA

Nearby chains

Chain N2

40S ribosomal protein S13

Chain b2

40S ribosomal protein S27-A