IL_5M1J_187

3D structure

PDB id

5M1J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nonstop ribosomal complex bound with Dom34 and Hbs1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GUG*CC

Length

5 nucleotides

Bulged bases

5M1J|1|22|U|1052

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5M1J_187 not in the Motif Atlas

Geometric match to IL_5TBW_086

Geometric discrepancy: 0.298

The information below is about IL_5TBW_086

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.19

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

5M1J|1|22|G|1051
5M1J|1|22|U|1052
5M1J|1|22|G|1053
*
5M1J|1|22|C|1066
5M1J|1|22|C|1067

Current chains

Chain 22

18S ribosomal RNA

Nearby chains

Chain A2

40S ribosomal protein S0-A

Chain B2

40S ribosomal protein S1-A

Chain R2

40S ribosomal protein S17-B

Chain b2

40S ribosomal protein S27-A