IL_5M1J_194
3D structure
- PDB id
- 5M1J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Nonstop ribosomal complex bound with Dom34 and Hbs1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- GUC*GUU
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5M1J_194 not in the Motif Atlas
- Geometric match to IL_3SZX_003
- Geometric discrepancy: 0.1374
- The information below is about IL_3SZX_003
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- Isolated non-canonical cWW pair
- Motif group
- IL_01003.1
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 174
Unit IDs
5M1J|1|22|G|1213
5M1J|1|22|U|1214
5M1J|1|22|C|1215
*
5M1J|1|22|G|1448
5M1J|1|22|U|1449
5M1J|1|22|U|1450
Current chains
- Chain 22
- 18S ribosomal RNA
Nearby chains
- Chain K2
- 40S ribosomal protein S10-A
- Chain P2
- 40S ribosomal protein S15
- Chain d2
- 40S ribosomal protein S29-A
- Chain f2
- Ubiquitin-40S ribosomal protein S31
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