IL_5M1J_195

3D structure

PDB id

5M1J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nonstop ribosomal complex bound with Dom34 and Hbs1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

AAUAAGGA*UUUU

Length

12 nucleotides

Bulged bases

5M1J|1|22|G|1228

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5M1J|1|22|A|1223
5M1J|1|22|A|1224
5M1J|1|22|U|1225
5M1J|1|22|A|1226
5M1J|1|22|A|1227
5M1J|1|22|G|1228
5M1J|1|22|G|1229
5M1J|1|22|A|1230
*
5M1J|1|22|U|1257
5M1J|1|22|U|1258
5M1J|1|22|U|1259
5M1J|1|22|U|1260

Current chains

Chain 22

18S ribosomal RNA

Nearby chains

Chain K2

40S ribosomal protein S10-A

Chain M2

40S ribosomal protein S12

Chain f2

Ubiquitin-40S ribosomal protein S31