IL_5M1J_206

3D structure

PDB id

5M1J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nonstop ribosomal complex bound with Dom34 and Hbs1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GUG*UUAUC

Length

8 nucleotides

Bulged bases

5M1J|1|22|U|1370, 5M1J|1|22|A|1371

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5M1J_206 not in the Motif Atlas

Homologous match to IL_4V88_457

Geometric discrepancy: 0.2954

The information below is about IL_4V88_457

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

5M1J|1|22|G|1352
5M1J|1|22|U|1353
5M1J|1|22|G|1354
*
5M1J|1|22|U|1369
5M1J|1|22|U|1370
5M1J|1|22|A|1371
5M1J|1|22|U|1372
5M1J|1|22|C|1373

Current chains

Chain 22

18S ribosomal RNA

Nearby chains

Chain Q2

40S ribosomal protein S16-A

Chain T2

40S ribosomal protein S19-A

Chain U2

40S ribosomal protein S20