IL_5M1J_230
3D structure
- PDB id
- 5M1J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Nonstop ribosomal complex bound with Dom34 and Hbs1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- GU*AUC
- Length
- 5 nucleotides
- Bulged bases
- 5M1J|1|44|U|90
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5M1J_230 not in the Motif Atlas
- Homologous match to IL_5TBW_146
- Geometric discrepancy: 0.199
- The information below is about IL_5TBW_146
- Detailed Annotation
- Single bulged U
- Broad Annotation
- No text annotation
- Motif group
- IL_83039.19
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 123
Unit IDs
5M1J|1|44|G|68
5M1J|1|44|U|69
*
5M1J|1|44|A|89
5M1J|1|44|U|90
5M1J|1|44|C|91
Current chains
- Chain 44
- 5.8S ribosomal RNA
Nearby chains
- Chain 14
- Large subunit ribosomal RNA; LSU rRNA
- Chain Y5
- 60S ribosomal protein L26-A
- Chain h5
- 60S ribosomal protein L35-A
- Chain j5
- 60S ribosomal protein L37-A
- Chain l5
- 60S ribosomal protein L39
Coloring options: