IL_5M1J_233

3D structure

PDB id

5M1J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nonstop ribosomal complex bound with Dom34 and Hbs1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CGUAU*AAG

Length

8 nucleotides

Bulged bases

5M1J|1|14|A|1103

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5M1J_233 not in the Motif Atlas

Homologous match to IL_8P9A_264

Geometric discrepancy: 0.2468

The information below is about IL_8P9A_264

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_25463.2

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

3

Unit IDs

5M1J|1|14|C|977
5M1J|1|14|G|978
5M1J|1|14|U|979
5M1J|1|14|A|980
5M1J|1|14|U|981
*
5M1J|1|14|A|1102
5M1J|1|14|A|1103
5M1J|1|14|G|1104

Current chains

Chain 14

25S ribosomal RNA

Nearby chains

Chain F5

60S ribosomal protein L7-A

Chain Q5

60S ribosomal protein L18-A

Chain b5

60S ribosomal protein L29