IL_5M1J_235

3D structure

PDB id

5M1J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nonstop ribosomal complex bound with Dom34 and Hbs1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UCAAC*GGA

Length

8 nucleotides

Bulged bases

5M1J|1|14|G|1514

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5M1J_235 not in the Motif Atlas

Homologous match to IL_8P9A_290

Geometric discrepancy: 0.1203

The information below is about IL_8P9A_290

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_63596.12

Basepair signature

cWW-cWS-cSH-tWH-cWW-L

Number of instances in this motif group

22

Unit IDs

5M1J|1|14|U|1501
5M1J|1|14|C|1502
5M1J|1|14|A|1503
5M1J|1|14|A|1504
5M1J|1|14|C|1505
*
5M1J|1|14|G|1513
5M1J|1|14|G|1514
5M1J|1|14|A|1515

Current chains

Chain 14

25S ribosomal RNA

Nearby chains

Chain P5

60S ribosomal protein L17-A

Chain R5

60S ribosomal protein L19-A

Chain l5

60S ribosomal protein L39