IL_5M1J_237

3D structure

PDB id

5M1J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nonstop ribosomal complex bound with Dom34 and Hbs1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GAAUAAUG*CUAUC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5M1J|1|14|G|1882
5M1J|1|14|A|1883
5M1J|1|14|A|1884
5M1J|1|14|U|1885
5M1J|1|14|A|1886
5M1J|1|14|A|1887
5M1J|1|14|U|1888
5M1J|1|14|G|1889
*
5M1J|1|14|C|2346
5M1J|1|14|U|2347
5M1J|1|14|A|2348
5M1J|1|14|U|2349
5M1J|1|14|C|2350

Current chains

Chain 14

25S ribosomal RNA

Nearby chains

Chain B5

60S ribosomal protein L3

Chain P5

60S ribosomal protein L17-A

Chain d5

60S ribosomal protein L31-A