IL_5M1J_238

3D structure

PDB id

5M1J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nonstop ribosomal complex bound with Dom34 and Hbs1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GGAAGUCGG*CUGUC

Length

14 nucleotides

Bulged bases

5M1J|1|14|G|2335

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5M1J_238 not in the Motif Atlas

Homologous match to IL_8C3A_484

Geometric discrepancy: 0.1182

The information below is about IL_8C3A_484

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_04332.2

Basepair signature

cWW-cWW-L-cWW-L-R-L-R-L-L

Number of instances in this motif group

3

Unit IDs

5M1J|1|14|G|1898
5M1J|1|14|G|1899
5M1J|1|14|A|1900
5M1J|1|14|A|1901
5M1J|1|14|G|1902
5M1J|1|14|U|1903
5M1J|1|14|C|1904
5M1J|1|14|G|1905
5M1J|1|14|G|1906
*
5M1J|1|14|C|2333
5M1J|1|14|U|2334
5M1J|1|14|G|2335
5M1J|1|14|U|2336
5M1J|1|14|C|2337

Current chains

Chain 14

25S ribosomal RNA

Nearby chains

Chain B5

60S ribosomal protein L3

Chain V5

60S ribosomal protein L23-A