IL_5M1J_239

3D structure

PDB id

5M1J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nonstop ribosomal complex bound with Dom34 and Hbs1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

AAGGGUCGGGUA*UACAAUUAACGAUCAACUU

Length

31 nucleotides

Bulged bases

5M1J|1|14|G|1953

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5M1J|1|14|A|1945
5M1J|1|14|A|1946
5M1J|1|14|G|1947
5M1J|1|14|G|1948
5M1J|1|14|G|1949
5M1J|1|14|U|1950
5M1J|1|14|C|1951
5M1J|1|14|G|1952
5M1J|1|14|G|1953
5M1J|1|14|G|1954
5M1J|1|14|U|1955
5M1J|1|14|A|1956
*
5M1J|1|14|U|2085
5M1J|1|14|A|2086
5M1J|1|14|C|2087
5M1J|1|14|A|2088
5M1J|1|14|A|2089
5M1J|1|14|U|2090
5M1J|1|14|U|2091
5M1J|1|14|A|2092
5M1J|1|14|A|2093
5M1J|1|14|C|2094
5M1J|1|14|G|2095
5M1J|1|14|A|2096
5M1J|1|14|U|2097
5M1J|1|14|C|2098
5M1J|1|14|A|2099
5M1J|1|14|A|2100
5M1J|1|14|C|2101
5M1J|1|14|U|2102
5M1J|1|14|U|2103

Current chains

Chain 14

25S ribosomal RNA

Nearby chains

Chain 22

Small subunit ribosomal RNA; SSU rRNA

Chain I2

40S ribosomal protein S8-A

Chain L2

40S ribosomal protein S11-A

Chain R5

60S ribosomal protein L19-A