3D structure

PDB id
5M1J (explore in PDB, NAKB, or RNA 3D Hub)
Description
Nonstop ribosomal complex bound with Dom34 and Hbs1
Experimental method
ELECTRON MICROSCOPY
Resolution
3.3 Å

Loop

Sequence
UUUGA*UACAA
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_5M1J_245 not in the Motif Atlas
Geometric match to IL_8D29_010
Geometric discrepancy: 0.2192
The information below is about IL_8D29_010
Detailed Annotation
Partly complementary
Broad Annotation
Partly complementary
Motif group
IL_49751.4
Basepair signature
cWW-cWW-cWW-cWW-cWW
Number of instances in this motif group
16

Unit IDs

5M1J|1|14|U|2717
5M1J|1|14|U|2718
5M1J|1|14|U|2719
5M1J|1|14|G|2720
5M1J|1|14|A|2721
*
5M1J|1|14|U|2735
5M1J|1|14|A|2736
5M1J|1|14|C|2737
5M1J|1|14|A|2738
5M1J|1|14|A|2739

Current chains

Chain 14
25S ribosomal RNA

Nearby chains

Chain D5
60S ribosomal protein L5
Chain Q5
60S ribosomal protein L18-A
Chain T5
60S ribosomal protein L21-A
Chain b5
60S ribosomal protein L29
Chain o5
60S ribosomal protein L42-B

Coloring options:


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