IL_5M1J_245
3D structure
- PDB id
- 5M1J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Nonstop ribosomal complex bound with Dom34 and Hbs1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- UUUGA*UACAA
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5M1J_245 not in the Motif Atlas
- Geometric match to IL_8D29_010
- Geometric discrepancy: 0.2192
- The information below is about IL_8D29_010
- Detailed Annotation
- Partly complementary
- Broad Annotation
- Partly complementary
- Motif group
- IL_49751.4
- Basepair signature
- cWW-cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 16
Unit IDs
5M1J|1|14|U|2717
5M1J|1|14|U|2718
5M1J|1|14|U|2719
5M1J|1|14|G|2720
5M1J|1|14|A|2721
*
5M1J|1|14|U|2735
5M1J|1|14|A|2736
5M1J|1|14|C|2737
5M1J|1|14|A|2738
5M1J|1|14|A|2739
Current chains
- Chain 14
- 25S ribosomal RNA
Nearby chains
- Chain D5
- 60S ribosomal protein L5
- Chain Q5
- 60S ribosomal protein L18-A
- Chain T5
- 60S ribosomal protein L21-A
- Chain b5
- 60S ribosomal protein L29
- Chain o5
- 60S ribosomal protein L42-B
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