IL_5M1J_249

3D structure

PDB id

5M1J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nonstop ribosomal complex bound with Dom34 and Hbs1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UGU*AGA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5M1J_249 not in the Motif Atlas

Homologous match to IL_8P9A_384

Geometric discrepancy: 0.2991

The information below is about IL_8P9A_384

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_44465.1

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

9

Unit IDs

5M1J|1|22|U|150
5M1J|1|22|G|151
5M1J|1|22|U|152
*
5M1J|1|22|A|162
5M1J|1|22|G|163
5M1J|1|22|A|164

Current chains

Chain 22

18S ribosomal RNA

Nearby chains

Chain G2

40S ribosomal protein S6-A

Chain W5

60S ribosomal protein L24-A

Chain Y2

40S ribosomal protein S24-A