IL_5M1J_253

3D structure

PDB id

5M1J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nonstop ribosomal complex bound with Dom34 and Hbs1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GAUACAGGGCCC*GGGUCUUGUAAUU

Length

25 nucleotides

Bulged bases

5M1J|1|22|A|506

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5M1J|1|22|G|480
5M1J|1|22|A|481
5M1J|1|22|U|482
5M1J|1|22|A|483
5M1J|1|22|C|484
5M1J|1|22|A|485
5M1J|1|22|G|486
5M1J|1|22|G|487
5M1J|1|22|G|488
5M1J|1|22|C|489
5M1J|1|22|C|490
5M1J|1|22|C|491
*
5M1J|1|22|G|496
5M1J|1|22|G|497
5M1J|1|22|G|498
5M1J|1|22|U|499
5M1J|1|22|C|500
5M1J|1|22|U|501
5M1J|1|22|U|502
5M1J|1|22|G|503
5M1J|1|22|U|504
5M1J|1|22|A|505
5M1J|1|22|A|506
5M1J|1|22|U|507
5M1J|1|22|U|508

Current chains

Chain 22

18S ribosomal RNA

Nearby chains

Chain A6

Protein HBS1

Chain J2

40S ribosomal protein S9-A

Chain e2

40S ribosomal protein S30-A