IL_5M1J_255
3D structure
- PDB id
- 5M1J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Nonstop ribosomal complex bound with Dom34 and Hbs1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- GUCU*AGC
- Length
- 7 nucleotides
- Bulged bases
- 5M1J|1|22|U|558
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5M1J_255 not in the Motif Atlas
- Geometric match to IL_8C3A_008
- Geometric discrepancy: 0.1939
- The information below is about IL_8C3A_008
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_44258.2
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 301
Unit IDs
5M1J|1|22|G|557
5M1J|1|22|U|558
5M1J|1|22|C|559
5M1J|1|22|U|560
*
5M1J|1|22|A|585
5M1J|1|22|G|586
5M1J|1|22|C|587
Current chains
- Chain 22
- 18S ribosomal RNA
Nearby chains
- Chain A1
- Protein DOM34
- Chain D2
- 40S ribosomal protein S3
- Chain X2
- 40S ribosomal protein S23-A
- Chain e2
- 40S ribosomal protein S30-A
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