IL_5M1J_262
3D structure
- PDB id
- 5M1J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Nonstop ribosomal complex bound with Dom34 and Hbs1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- GGGAUAG*CUUCAAC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5M1J_262 not in the Motif Atlas
- Homologous match to IL_8C3A_469
- Geometric discrepancy: 0.1271
- The information below is about IL_8C3A_469
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_10092.1
- Basepair signature
- cWW-tSH-tSH-L-R-cWW-L-R-cWW
- Number of instances in this motif group
- 1
Unit IDs
5M1J|1|22|G|1540
5M1J|1|22|G|1541
5M1J|1|22|G|1542
5M1J|1|22|A|1543
5M1J|1|22|U|1544
5M1J|1|22|A|1545
5M1J|1|22|G|1546
*
5M1J|1|22|C|1565
5M1J|1|22|U|1566
5M1J|1|22|U|1567
5M1J|1|22|C|1568
5M1J|1|22|A|1569
5M1J|1|22|A|1570
5M1J|1|22|C|1571
Current chains
- Chain 22
- 18S ribosomal RNA
Nearby chains
- Chain F2
- 40S ribosomal protein S5
- Chain S2
- 40S ribosomal protein S18-A
- Chain T2
- 40S ribosomal protein S19-A
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