IL_5M1J_267
3D structure
- PDB id
- 5M1J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Nonstop ribosomal complex bound with Dom34 and Hbs1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- UGU*AUCA
- Length
- 7 nucleotides
- Bulged bases
- 5M1J|1|44|U|90
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5M1J_267 not in the Motif Atlas
- Geometric match to IL_7ECP_001
- Geometric discrepancy: 0.1677
- The information below is about IL_7ECP_001
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_87907.2
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 179
Unit IDs
5M1J|1|44|U|67
5M1J|1|44|G|68
5M1J|1|44|U|69
*
5M1J|1|44|A|89
5M1J|1|44|U|90
5M1J|1|44|C|91
5M1J|1|44|A|92
Current chains
- Chain 44
- 5.8S ribosomal RNA
Nearby chains
- Chain 14
- Large subunit ribosomal RNA; LSU rRNA
- Chain Y5
- 60S ribosomal protein L26-A
- Chain h5
- 60S ribosomal protein L35-A
- Chain j5
- 60S ribosomal protein L37-A
- Chain l5
- 60S ribosomal protein L39
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