IL_5M1J_272

3D structure

PDB id

5M1J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nonstop ribosomal complex bound with Dom34 and Hbs1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GACAUAGAGGGUGUAGAAUAA*UACCUUUAUAGU

Length

33 nucleotides

Bulged bases

5M1J|1|14|A|2458, 5M1J|1|14|U|2499, 5M1J|1|14|A|2500, 5M1J|1|14|U|2501

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5M1J|1|14|G|2442
5M1J|1|14|A|2443
5M1J|1|14|C|2444
5M1J|1|14|A|2445
5M1J|1|14|U|2446
5M1J|1|14|A|2447
5M1J|1|14|G|2448
5M1J|1|14|A|2449
5M1J|1|14|G|2450
5M1J|1|14|G|2451
5M1J|1|14|G|2452
5M1J|1|14|U|2453
5M1J|1|14|G|2454
5M1J|1|14|U|2455
5M1J|1|14|A|2456
5M1J|1|14|G|2457
5M1J|1|14|A|2458
5M1J|1|14|A|2459
5M1J|1|14|U|2460
5M1J|1|14|A|2461
5M1J|1|14|A|2462
*
5M1J|1|14|U|2493
5M1J|1|14|A|2494
5M1J|1|14|C|2495
5M1J|1|14|C|2496
5M1J|1|14|U|2497
5M1J|1|14|U|2498
5M1J|1|14|U|2499
5M1J|1|14|A|2500
5M1J|1|14|U|2501
5M1J|1|14|A|2502
5M1J|1|14|G|2503
5M1J|1|14|U|2504

Current chains

Chain 14

25S ribosomal RNA

Nearby chains

Chain G5

60S ribosomal protein L8-A

Chain N5

60S ribosomal protein L15-A

Chain i5

60S ribosomal protein L36-A