IL_5M1J_277

3D structure

PDB id

5M1J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nonstop ribosomal complex bound with Dom34 and Hbs1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

AAUA*UUCU

Length

8 nucleotides

Bulged bases

5M1J|1|22|A|1346, 5M1J|1|22|U|1347

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5M1J_277 not in the Motif Atlas

Homologous match to IL_8P9A_445

Geometric discrepancy: 0.3336

The information below is about IL_8P9A_445

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_78800.2

Basepair signature

cWW-cSH-L-cWW

Number of instances in this motif group

3

Unit IDs

5M1J|1|22|A|1345
5M1J|1|22|A|1346
5M1J|1|22|U|1347
5M1J|1|22|A|1348
*
5M1J|1|22|U|1377
5M1J|1|22|U|1378
5M1J|1|22|C|1379
5M1J|1|22|U|1380

Current chains

Chain 22

18S ribosomal RNA

Nearby chains

Chain Q2

40S ribosomal protein S16-A

Chain U2

40S ribosomal protein S20