IL_5M73_012

3D structure

PDB id

5M73 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human SRP S domain with SRP72 RNA-binding domain

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

UAAG*CAGUA

Length

9 nucleotides

Bulged bases

5M73|1|E|A|231

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5M73_012 not in the Motif Atlas

Geometric match to IL_6CZR_168

Geometric discrepancy: 0.2455

The information below is about IL_6CZR_168

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67743.1

Basepair signature

cWW-cWW-cWH-cWW

Number of instances in this motif group

9

Unit IDs

5M73|1|E|U|117
5M73|1|E|A|118
5M73|1|E|A|119
5M73|1|E|G|120
*
5M73|1|E|C|230
5M73|1|E|A|231
5M73|1|E|G|232
5M73|1|E|U|233
5M73|1|E|A|234

Current chains

Chain E

Human gene for small cytoplasmic 7SL RNA (7L30.1)

Nearby chains

Chain G

Signal recognition particle subunit SRP68

Chain H

Signal recognition particle subunit SRP72