IL_5M73_013

3D structure

PDB id

5M73 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human SRP S domain with SRP72 RNA-binding domain

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GUU*AUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5M73_013 not in the Motif Atlas

Homologous match to IL_1MFQ_002

Geometric discrepancy: 0.2244

The information below is about IL_1MFQ_002

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_71625.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

79

Unit IDs

5M73|1|E|G|120
5M73|1|E|U|121
5M73|1|E|U|122
*
5M73|1|E|A|228
5M73|1|E|U|229
5M73|1|E|C|230

Current chains

Chain E

Human gene for small cytoplasmic 7SL RNA (7L30.1)

Nearby chains

Chain G

Signal recognition particle subunit SRP68

Chain H

Signal recognition particle subunit SRP72