IL_5MC6_020

3D structure

PDB id

5MC6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a native ribosome-Ski2-Ski3-Ski8 complex from S. cerevisiae

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CGGGG*CGAUUCCG

Length

13 nucleotides

Bulged bases

5MC6|1|2|U|380

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5MC6|1|2|C|361
5MC6|1|2|G|362
5MC6|1|2|G|363
5MC6|1|2|G|364
5MC6|1|2|G|365
*
5MC6|1|2|C|376
5MC6|1|2|G|377
5MC6|1|2|A|378
5MC6|1|2|U|379
5MC6|1|2|U|380
5MC6|1|2|C|381
5MC6|1|2|C|382
5MC6|1|2|G|383

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain S

40S ribosomal protein S4-A

Chain V

40S ribosomal protein S8-A

Chain W

40S ribosomal protein S9-A

Chain c

40S ribosomal protein S23-A