IL_5MC6_034
3D structure
- PDB id
- 5MC6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a native ribosome-Ski2-Ski3-Ski8 complex from S. cerevisiae
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- CGUAGU*AUCAAG
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5MC6_034 not in the Motif Atlas
- Geometric match to IL_8ZA4_001
- Geometric discrepancy: 0.1855
- The information below is about IL_8ZA4_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_76308.6
- Basepair signature
- cWW-tSH-tHW-tHS-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
5MC6|1|2|C|627
5MC6|1|2|G|628
5MC6|1|2|U|629
5MC6|1|2|A|630
5MC6|1|2|G|631
5MC6|1|2|U|632
*
5MC6|1|2|A|967
5MC6|1|2|U|968
5MC6|1|2|C|969
5MC6|1|2|A|970
5MC6|1|2|A|971
5MC6|1|2|G|972
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain BQ
- Large subunit ribosomal RNA; LSU rRNA
- Chain X
- 40S ribosomal protein S11-A
- Chain Y
- 40S ribosomal protein S13
- Chain b
- 40S ribosomal protein S22-A
- Chain c
- 40S ribosomal protein S23-A
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