IL_5MC6_046

3D structure

PDB id

5MC6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a native ribosome-Ski2-Ski3-Ski8 complex from S. cerevisiae

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UUGUCAG*CUUGGAUUUA

Length

17 nucleotides

Bulged bases

5MC6|1|2|G|913

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5MC6_046 not in the Motif Atlas

Homologous match to IL_8C3A_440

Geometric discrepancy: 0.3017

The information below is about IL_8C3A_440

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_22252.1

Basepair signature

cWW-L-R-L-R-L-R-L-R-L-R-L-cWW-L

Number of instances in this motif group

1

Unit IDs

5MC6|1|2|U|893
5MC6|1|2|U|894
5MC6|1|2|G|895
5MC6|1|2|U|896
5MC6|1|2|C|897
5MC6|1|2|A|898
5MC6|1|2|G|899
*
5MC6|1|2|C|910
5MC6|1|2|U|911
5MC6|1|2|U|912
5MC6|1|2|G|913
5MC6|1|2|G|914
5MC6|1|2|A|915
5MC6|1|2|U|916
5MC6|1|2|U|917
5MC6|1|2|U|918
5MC6|1|2|A|919

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain BQ

Large subunit ribosomal RNA; LSU rRNA

Chain Q

40S ribosomal protein S1-A

Chain Z

40S ribosomal protein S14-A