IL_5MC6_056

3D structure

PDB id

5MC6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a native ribosome-Ski2-Ski3-Ski8 complex from S. cerevisiae

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CCU*GCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5MC6_056 not in the Motif Atlas

Geometric match to IL_4LFB_063

Geometric discrepancy: 0.2591

The information below is about IL_4LFB_063

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

214

Unit IDs

5MC6|1|2|C|1173
5MC6|1|2|C|1174
5MC6|1|2|U|1175
*
5MC6|1|2|G|1464
5MC6|1|2|C|1465
5MC6|1|2|G|1466

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain F

40S ribosomal protein S16-A

Chain H

40S ribosomal protein S18-A

Chain I

40S ribosomal protein S19-A

Chain J

40S ribosomal protein S20

Chain n

Transfer RNA; tRNA