IL_5MC6_057

3D structure

PDB id

5MC6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a native ribosome-Ski2-Ski3-Ski8 complex from S. cerevisiae

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CGG*CACG

Length

7 nucleotides

Bulged bases

5MC6|1|2|A|1460

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5MC6_057 not in the Motif Atlas

Geometric match to IL_2O3X_003

Geometric discrepancy: 0.3565

The information below is about IL_2O3X_003

Detailed Annotation

Decoding loop related

Broad Annotation

Decoding loop related

Motif group

IL_53541.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

12

Unit IDs

5MC6|1|2|C|1177
5MC6|1|2|G|1178
5MC6|1|2|G|1179
*
5MC6|1|2|C|1459
5MC6|1|2|A|1460
5MC6|1|2|C|1461
5MC6|1|2|G|1462

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain E

40S ribosomal protein S15

Chain H

40S ribosomal protein S18-A

Chain n

Transfer RNA; tRNA