IL_5MC6_060

3D structure

PDB id

5MC6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a native ribosome-Ski2-Ski3-Ski8 complex from S. cerevisiae

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

AUUG*CUUGAU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5MC6|1|2|A|1230
5MC6|1|2|U|1231
5MC6|1|2|U|1232
5MC6|1|2|G|1233
*
5MC6|1|2|C|1252
5MC6|1|2|U|1253
5MC6|1|2|U|1254
5MC6|1|2|G|1255
5MC6|1|2|A|1256
5MC6|1|2|U|1257

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain C

40S ribosomal protein S10-A

Chain D

40S ribosomal protein S12

Chain M

40S ribosomal protein S29-A

Chain N

Ubiquitin-40S ribosomal protein S31