IL_5MC6_081

3D structure

PDB id

5MC6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a native ribosome-Ski2-Ski3-Ski8 complex from S. cerevisiae

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UUA*UUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5MC6_081 not in the Motif Atlas

Homologous match to IL_4V88_470

Geometric discrepancy: 0.1647

The information below is about IL_4V88_470

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

5MC6|1|2|U|1665
5MC6|1|2|U|1666
5MC6|1|2|A|1667
*
5MC6|1|2|U|1734
5MC6|1|2|U|1735
5MC6|1|2|G|1736

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain AB

60S ribosomal protein L23-A

Chain BQ

Large subunit ribosomal RNA; LSU rRNA

Chain V

40S ribosomal protein S8-A