IL_5MC6_093

3D structure

PDB id

5MC6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a native ribosome-Ski2-Ski3-Ski8 complex from S. cerevisiae

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UGG*CUUUGUA

Length

10 nucleotides

Bulged bases

5MC6|1|BQ|U|252

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5MC6|1|BQ|U|169
5MC6|1|BQ|G|170
5MC6|1|BQ|G|171
*
5MC6|1|BQ|C|247
5MC6|1|BQ|U|248
5MC6|1|BQ|U|249
5MC6|1|BQ|U|250
5MC6|1|BQ|G|251
5MC6|1|BQ|U|252
5MC6|1|BQ|A|253

Current chains

Chain BQ

25S ribosomal RNA

Nearby chains

Chain AA

60S ribosomal protein L8-A

Chain AJ

60S ribosomal protein L13-A

Chain BP

60S ribosomal protein L35-A