IL_5MC6_103

3D structure

PDB id

5MC6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a native ribosome-Ski2-Ski3-Ski8 complex from S. cerevisiae

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GAAUGUAGC*GUAUUAUAGC

Length

19 nucleotides

Bulged bases

5MC6|1|BQ|U|534, 5MC6|1|BQ|U|558

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5MC6|1|BQ|G|531
5MC6|1|BQ|A|532
5MC6|1|BQ|A|533
5MC6|1|BQ|U|534
5MC6|1|BQ|G|535
5MC6|1|BQ|U|536
5MC6|1|BQ|A|537
5MC6|1|BQ|G|538
5MC6|1|BQ|C|539
*
5MC6|1|BQ|G|552
5MC6|1|BQ|U|553
5MC6|1|BQ|A|554
5MC6|1|BQ|U|555
5MC6|1|BQ|U|556
5MC6|1|BQ|A|557
5MC6|1|BQ|U|558
5MC6|1|BQ|A|559
5MC6|1|BQ|G|560
5MC6|1|BQ|C|561

Current chains

Chain BQ

25S ribosomal RNA

Nearby chains

Chain AM

60S ribosomal protein L14-A

Chain BH

60S ribosomal protein L20-A